recology
code and such

I just realized that the gists code blocks don’t show up in Google Reader, so you have to click the link to my blog to see the gists. Apologies for that!-S

With all the packages (and beta stage groups of functions) for comparative phylogenetics in R (tested here: picante, geiger, ape, motmot, Liam Revell’s functions), I was simply interested in which ...

RHIPE: An Interface Between Hadoop and RPresented by Saptarshi Guha And this review of methods for interfacing with Hadoop suggests R’s RHIPE is quite nice.

UPDATE: See Carl Boettiger’s functions/package at Github for searching Treebase here. Treebase is a great resource for phylogenetic trees, and has a nice interface for searching for certain types ...

So perhaps you have all figured this out already, but I was excited to figure out how to finally neatly get all the data frames, lists, vectors, etc. out of a nested list. It is as easy as nesting ...