recology
code and such

Here is some code to run Phylip’s contrast application from R and get the output within R to easily manipulate yourself. Importantly, the code is written specifically for trait pairs only as the re...

—UPDATE: I am now using code formatting from gist.github, so I replaced the old prettyR code (sorry guys). The github way is much easier and prettier. I hope readers like the change. I wrote earli...

RStudio Beta 2 (v0.93) « RStudio Blog A new beta version of RStudio is out!

Here is an approach for comparing two methods of adjusting branch lengths on trees: bladj in the program Phylocom and a fxn written by Gene Hunt at the Smithsonian. Get the code and example files ...

A while back I posted some messy code to run Phylometa from R, especially useful for processing the output data from Phylometa which is not easily done. The code is still quite messy, but it should...