recology
code and such

A while back I posted some messy code to run Phylometa from R, especially useful for processing the output data from Phylometa which is not easily done. The code is still quite messy, but it should...

Bio-ORACLE A new dataset available of geophysical, biotic and climate data. Should be fun to play with in R.

I posted last week a simple function to plot networks using ggplot2 package. Here is version 2. I still need to work on figuring out efficient vertex placement. Changes in version 2: + You have o...

I have been looking around on the web and have not found anything yet related to using ggplot2 for making graphs/networks. I put together a few functions to make very simple graphs. The bipartite f...

A post over at the Phased blog (http://www.nasw.org/users/mslong/) highlights a recent paper in PLoS One by Robert Warren et al. Similar results were obtained in a 2007 Ecology Letters paper by Nek...