Tag: R

• Working at Fred Hutchinson Cancer Center (06 Oct 2023 | Tags: python, R)
• CRAN Checks API and Badges (02 Jun 2022 | Tags: R, cran)
• Mocking HTTP redirects (27 Nov 2021 | Tags: R, http, API)
• API client design: how to deal with lots of parameters? (21 Dec 2020 | Tags: R, programming, builder-pattern)
• stories behind archived packages (10 Sep 2020 | Tags: R, taxonomy, database)
• taxizedb: an update (17 Aug 2020 | Tags: R, taxonomy, database)
• how many parameters? (10 Feb 2020 | Tags: R, programming)
• finding truffles (30 Jan 2020 | Tags: R, testing, truffles)
• text mining, apis, and parsing api logs (21 Mar 2019 | Tags: R, API, text-mining, DOI)
• Exceptions in control flow in R (04 Mar 2019 | Tags: R, control flow, exceptions, exception handling, API, http)
• Notes on porting Ruby to R (19 Feb 2019 | Tags: R, ruby)
• trailing commas (07 Feb 2019 | Tags: R, syntax)
• condition control: I just want that message once (06 Dec 2018 | Tags: R, open source, code, conditions)
• limiting dependencies in R package development (02 Oct 2018 | Tags: R, open source, code)
• Balancing user friendliness and code fragility (27 Jul 2018 | Tags: R, open source, code)
• Exploring specimen collections data in Butte County, California (12 Jun 2018 | Tags: R, species, specimen, Butte County, occurrences, data)
• Exploring git commits with git2r (05 Feb 2018 | Tags: R, git, open-source)
• My Sublime Text workflow/setup (31 Jan 2018 | Tags: R, sublime-text, workflow)
• Playing with Ruby Patterns in R (25 Jan 2018 | Tags: R, ruby)
• habanero update: Crossref data from Python (23 Oct 2017 | Tags: python, ruby, R, javascript, crossref)
• cranchecks: an API for CRAN check results (27 Sep 2017 | Tags: API, cran, R)
• hoardr: simple file caching (15 Aug 2017 | Tags: R, cache, caching)
• CascadiaRConf (23 Mar 2017 | Tags: conference, R)
• USDA plants database API in R (19 Oct 2016 | Tags: API, R, ecology, plants)
• nonoyes - text analysis of Reply All podcast transcripts (25 Aug 2016 | Tags: text-mining, R)
• Marine Regions data in R (09 Jun 2016 | Tags: R, shp, spatial, geospatial, marine)
• atomize - make new packages from other packages (07 Apr 2016 | Tags: R, package)
• scrubr - clean species occurrence records (04 Mar 2016 | Tags: R, occurrences, occurrence records, species, ecology)
• request - a high level HTTP client for R (05 Jan 2016 | Tags: R, API, http, DSL, httr)
• binomen - Tools for slicing and dicing taxonomic names (08 Dec 2015 | Tags: R, taxonomy, split-apply-combine)
• Crossref programmatic clients (30 Nov 2015 | Tags: python, ruby, R, javascript, crossref)
• noaa - Integrated Surface Database data (21 Oct 2015 | Tags: R, API, climate)
• Metrics for open source projects (19 Oct 2015 | Tags: data, open source, altmetrics, code, ropensci, R)
• analogsea - an R client for the Digital Ocean API (02 Oct 2015 | Tags: R, API, cloud, servers)
• oai - an OAI-PMH client (11 Sep 2015 | Tags: literature, metadata, datasets, R)
• fulltext - a package to help you mine text (07 Aug 2015 | Tags: literature, text-mining, R)
• rnoaa - Weather data in R (07 Jul 2015 | Tags: R, API, NOAA, web services, weather)
• rerddap - General purpose R client for ERDDAP servers (24 Jun 2015 | Tags: R, API, NOAA, web services)
• iDigBio - a new data source in spocc (08 Jun 2015 | Tags: R, opendata)
• openadds - open addresses client (18 May 2015 | Tags: R, opendata)
• lawn - a new package to do geospatial analysis (18 May 2015 | Tags: R, geojson, javascript, geospatial)
• geojsonio - a new package to do geojson things (30 Apr 2015 | Tags: R, geojson, topojson, geospatial)
• the new way - httsnap (29 Apr 2015 | Tags: R, http, httr)
• Faster solr with csv (20 Mar 2015 | Tags: R, solr, database)
• PUT dataframes on your couch (12 Mar 2015 | Tags: R, couchdb, sofa)
• csl - an R client for Citation Style Language data (11 Mar 2015 | Tags: R, metadata)
• note to self, secure elasticsearch (26 Feb 2015 | Tags: R, elasticsearch, security)
• Package development (14 Feb 2015 | Tags: R, development)
• httping - ping and time http requests (30 Jan 2015 | Tags: R, http)
• elastic - Elasticsearch from R (29 Jan 2015 | Tags: R, http, API)
• binomen - taxonomic classes and parsing (19 Jan 2015 | Tags: R, taxonomy)
• discgolf - Dicourse from R (15 Jan 2015 | Tags: R, community, API)
• R I/O for geojson and topojson (06 Jan 2015 | Tags: R, geospatial, spatial, geojson, topojson)
• gistr - R client for GitHub gists (05 Jan 2015 | Tags: R, github)
• Museum metadata - the Asian Art Museum of San Francisco (10 Dec 2014 | Tags: R, history, scraping)
• icanhaz altmetrics (08 Dec 2014 | Tags: R, python, ruby, API, altmetrics)
• Dealing with multi handle errors (08 Dec 2014 | Tags: R, API, http, httr)
• Altmetrics from anywhere (08 Dec 2014 | Tags: R, API, altmetrics)
• Publications by author country (03 Dec 2014 | Tags: R, API, publications)
• http codes (02 Dec 2014 | Tags: R, API, http)
• taxize workflows (02 Dec 2014 | Tags: R, API, taxize, taxonomy)
• 1000 commits to taxize (28 Nov 2014 | Tags: R, API, taxize)
• Intro to alpha ckanr - R client for CKAN RESTful API (26 Nov 2014 | Tags: R, API, github, database)
• Fun with the GitHub API (26 Nov 2014 | Tags: R, API, github)
• sofa - reboot (18 Nov 2014 | Tags: R, API, database, couchdb, nosql)
• Conditionality meta-analysis data (06 Oct 2014 | Tags: R, data)
• rsunlight - R client for Sunlight Labs APIs (11 Aug 2014 | Tags: R, API, government)
• analogsea - v0.1 notes (18 Jun 2014 | Tags: R, API, cloud)
• analogsea - an R client for the Digital Ocean API (28 May 2014 | Tags: R, API, cloud)
• Logistic plot reboot (22 May 2014 | Tags: R, ggplot2, vizualization)
• cowsay - ascii messages and warnings for R (20 Feb 2014 | Tags: R, API, ascii)
• rgauges - fun with hourly web site analytics (17 Jan 2014 | Tags: R, API)
• Jekyll - an intro (20 Nov 2013 | Tags: R, github, jekyll, ruby)
• Guide to using rOpenSci packages during the US Gov't shutdown (08 Oct 2013 | Tags: R, help)
• Taxonomy data from the web in three languages (27 Sep 2013 | Tags: R, ruby, python, taxonomy)
• govdat - SunlightLabs and New York Times Congress data via R (28 Aug 2013 | Tags: R, API, government, transparency)
• Working with climate data from the web in R (17 Aug 2013 | Tags: climate change, phenology, R, API)
• R ecology workshop (31 Jul 2013 | Tags: R, ecology, ggplot2, reshape2, plyr)
• R resources (30 Jul 2013 | Tags: R)
• R to GeoJSON (30 Jun 2013 | Tags: R, API, geojson, json, openstreetmaps, maps)
• Put some cushions on the sofa (21 Jun 2013 | Tags: R, ropensci, API, database, couchdb, nosql)
• Stashing and playing with raw data locally from the web (17 Jun 2013 | Tags: R, ropensci, API, database, couchdb, nosql)
• Fylopic, an R wrapper to Phylopic (01 Jun 2013 | Tags: R, phylogenetic, API)
• BISON USGS species occurrence data (27 May 2013 | Tags: R, ropensci, occurrence, USGS, API)
• Scholarly metadata in R (16 Mar 2013 | Tags: R, ropensci, metadata, API)
• Visualizing rOpenSci collaboration (08 Mar 2013 | Tags: R, ropensci, github, API)
• Getting a simple tree via NCBI (14 Feb 2013 | Tags: R, phylogenetic)
• Waiting for an API request to complete (26 Jan 2013 | Tags: R, API, ropensci)
• Resolving species names when you have a lot of them (25 Jan 2013 | Tags: R, ropensci, taxize, taxonomic)
• Open Science Challenge (08 Jan 2013 | Tags: R, ropensci)
• Is invasive? (13 Dec 2012 | Tags: R, ropensci, taxize, invasive)
• Shiny apps are awesome (10 Dec 2012 | Tags: R, RStudio, ropensci, shiny)
• One R package for all your taxonomic needs (06 Dec 2012 | Tags: R, open source, data, taxonomy, ropensci, ritis, taxize)
• Displaying Your Data in Google Earth Using R2G2 (24 Oct 2012 | Tags: R, ecology, mapping, visualization, google earth, KML)
• Getting taxonomic names downstream (16 Oct 2012 | Tags: R, open access, data, taxonomy, ropensci, ritis, taxize)
• Exploring phylogenetic tree balance metrics (10 Oct 2012 | Tags: R, phylogenetic, tree shape)
• GBIF biodiversity data from R - more functions (08 Oct 2012 | Tags: R, open access, data, GBIF, biodiversity, macroecology, ropensci)
• Vertnet - getting vertebrate museum record data and a quick map (19 Sep 2012 | Tags: R, ropensci, open access, data, API)
• Getting data from figures in published papers (18 Sep 2012 | Tags: R, open access, data, digitize, API, figshare, meta-analysis)
• Scholarly metadata from R (17 Sep 2012 | Tags: R, open access, data, metadata, OAI-PMH)
• Getting data on your government (01 Sep 2012 | Tags: R, government, nytimes, sunlightlabs, API, transparency)
• Getting ecology and evolution journal titles from R (31 Aug 2012 | Tags: R, altmetrics, ecology, Evolution, DOI)
• Making matrices with zeros and ones (30 Aug 2012 | Tags: R, matrix, simulation)
• ggplot2 maps with insets (22 Aug 2012 | Tags: ggplot2, map, gridExtra, inset, R)
• Recent R packages for ecology and evolution (14 Jun 2012 | Tags: R, python, ecology, Evolution)
• mvabund - new R pkg for multivariate abundance data (19 Mar 2012 | Tags: datavisualization, abundance, R)
• Take the INNGE survey on math and ecology (17 Feb 2012 | Tags: R, math, statistics, ecology)
• Scraping Flora of North America (27 Jan 2012 | Tags: R, scraping)
• RNetLogo - A package for running NetLogo from R (23 Jan 2012 | Tags: NetLogo, R)
• Function for phylogeny resolution (13 Jan 2012 | Tags: R, ape, phylogenetics)
• Presenting results of logistic regression (10 Jan 2012 | Tags: ggplot2, gridExtra, R)
• Weecology can has new mammal dataset (29 Dec 2011 | Tags: Datasets, ggplot2, plyr, R, ropensci, stringr, treebase, weecology)
• Recology is 1 yr old (24 Dec 2011 | Tags: ggplot2, Evolution, Ecology, R)
• I Work For The Internet ! (13 Dec 2011 | Tags: lubridate, ggplot2, twitteR, plyr, R)
• LondonR meetings presentations (11 Dec 2011 | Tags: segue, LondonR, EC2, R)
• rOpenSci won 3rd place in the PLoS-Mendeley Binary Battle! (30 Nov 2011 | Tags: packages, rmendeley, openaccess, ropensci, rplos, R)
• My talk on doing phylogenetics in R (18 Nov 2011 | Tags: packages, phylocom, tutorials, phangorn, Phylogenetics, R, geiger, ggplot2, Evolution, ape, phytools, Picante, sciencetalks)
• My little presentation on getting web data through R (28 Oct 2011 | Tags: ggplot2, tutorials, API, codedev, sciencetalks, R, ITIS, Datasets)
• Two new rOpenSci R packages are on CRAN (27 Oct 2011 | Tags: packages, Ecology, codedev, R)
• Two-sex demographic models in R (26 Oct 2011 | Tags: Papers, Ecology, R)
• New food web dataset (14 Oct 2011 | Tags: ggplot2, Networks, igraph, R)
• Phylogenetic community structure: PGLMMs (13 Oct 2011 | Tags: Evolution, Papers, Ecology, Statistics, Picante, R)
• R talk on regular expressions (regex) (06 Oct 2011 | Tags: regex, sciencetalks, R)
• R tutorial on visualizations/graphics (30 Sep 2011 | Tags: tutorials, sciencetalks, R)
• My take on an R introduction talk (09 Sep 2011 | Tags: openaccess, Methods, sciencetalks, R)
• rnpn: An R interface for the National Phenology Network (31 Aug 2011 | Tags: ropensci, API, Ecology, R, Datasets)
• Tenure track position in systematics at the University of Vermont (22 Aug 2011 | Tags: Evolution, jobs, Phylogenetics, R)
• (#ESA11) rOpenSci: a collaborative effort to develop R-based tools for facilitating Open Science (08 Aug 2011 | Tags: openaccess, Evolution, API, Ecology, R, Datasets)
• CRdata vs. Cloudnumbers (14 Jul 2011 | Tags: cloudcomputing, R)
• rbold: An R Interface for Bold Systems barcode repository (28 Jun 2011 | Tags: openaccess, API, R, Datasets)
• iEvoBio 2011 Synopsis (23 Jun 2011 | Tags: openaccess, Meetings, Methods, Ecology, Phylogenetics, R, Datasets)
• PLoS journals API from R: "rplos" (21 Jun 2011 | Tags: openaccess, API, Papers, R)
• OpenStates from R via API: watch your elected representatives (11 Jun 2011 | Tags: R, Datasets)
• How to fit power laws (07 Jun 2011 | Tags: Methods, Papers, Statistics, R)
• searching ITIS and fetching Phylomatic trees (03 Jun 2011 | Tags: Phylogenetics, taxize, R, ITIS)
• A simple function for plotting phylogenies in ggplot2 (17 May 2011 | Tags: ggplot2, Phylogenetics, R)
• plyr's idata.frame VS. data.frame (13 May 2011 | Tags: plyr, R)
• Comparison of functions for comparative phylogenetics (11 May 2011 | Tags: Evolution, ape, Phylogenetics, R, motmot)
• Treebase trees from R (03 May 2011 | Tags: Phylogenetics, R)
• Processing nested lists (28 Apr 2011 | Tags: R)
• Running Phylip's contrast application for trait pairs from R (26 Apr 2011 | Tags: Phylogenetics, R)
• Phylometa from R: Randomization via Tip Shuffle (16 Apr 2011 | Tags: meta-analysis, Methods, Evolution, Phylogenetics, R)
• Adjust branch lengths with node ages: comparison of two methods (10 Apr 2011 | Tags: phylocom, Methods, Evolution, Phylogenetics, R)
• Phylometa from R - UDPATE (01 Apr 2011 | Tags: ggplot2, meta-analysis, Phylogenetics, R)
• basic ggplot2 network graphs ver2 (23 Mar 2011 | Tags: ggplot2, bipartite, Networks, igraph, R)
• basic ggplot2 network graphs (17 Mar 2011 | Tags: ggplot2, bipartite, Networks, igraph, R)
• Five ways to visualize your pairwise comparisons (05 Mar 2011 | Tags: ggplot2, Methods, lattice, car, R)
• Phenotypic selection analysis in R (24 Feb 2011 | Tags: Methods, Evolution, R)
• Phylogenetic analysis with the phangorn package: an example (21 Feb 2011 | Tags: Evolution, Papers, phangorn, Phylogenetics, R)
• Troubling news for the teaching of evolution (09 Feb 2011 | Tags: ggplot2, Policy, Evolution, Ecology, plyr, R, Datasets)
• Good riddance to Excel pivot tables (31 Jan 2011 | Tags: plyr, reshape2, R)
• R and Google Visualization API: Fish harvests (18 Jan 2011 | Tags: ggplot2, Ecology, GoogleVis, R, Datasets)
• R and Google Visualization API: Wikispeedia (18 Jan 2011 | Tags: GoogleVis, R)
• Bipartite networks and R (14 Jan 2011 | Tags: Networks, R)
• Just for fun: Recovery.gov data snooping (11 Jan 2011 | Tags: ggplot2, R, Datasets)
• R and Google Visualization API (09 Jan 2011 | Tags: Ecology, GoogleVis, R)
• Ecological networks from abundance distributions (06 Jan 2011 | Tags: Ecology, Networks, R)
• R-bloggers (05 Jan 2011 | Tags: R)
• New approach to analysis of phylogenetic community structure (05 Jan 2011 | Tags: Evolution, Papers, Ecology, Phylogenetics, Picante, R)
• Phylogenetic meta-analysis in R using Phylometa (28 Dec 2010 | Tags: ggplot2, Evolution, Ecology, Phylogenetics, R)
• A new blog about using R for ecology and evolution (27 Dec 2010 | Tags: Evolution, Ecology, R)